Allen Cell Discussion Forum

Topic	Replies	Views	Activity
Distance Transform 3D Segmenter	20	3694	January 14, 2020
Errors with running the demo of the Classic Image Segmentation Segmenter segmentation	17	2191	September 28, 2020
Cardiomyocyte Differentiation Issue hiPSC Culture Discussion cardiac	12	2112	February 22, 2024
Classic Image Segmentation installation Segmenter	9	1402	February 12, 2020
Image dimensions seem to be assigned incorrectly by aicsimageio when running deep learning segmenter Segmenter	12	1173	December 22, 2020
Batch Processing Error Segmenter	9	1222	November 21, 2020
3D single cell image data set Segmenter segmentation , segmenter , napari	12	1049	October 27, 2021
Playground 9: Segmentation workflows for lamin b1 (interphase) Segmenter segmentation	13	964	June 9, 2021
Iterative Deep Learning Workflow Segmenter	10	841	August 20, 2021
Downloading Cell Feature Data Software & Code getting-started	10	311	September 8, 2023
Pictures of Healthy vs Unhealthy hiPSC colonies hiPSC Culture Discussion	5	6403	January 20, 2026
Aicsshparam/cvapipe_analysis - questions about adding new alignment functions Miscellaneous	1	824	March 9, 2021
Steps to compare Allen Institute's raw sequencing data for the WTC-11 hiPSC line Gene-editing Discussion sequencing	6	2311	April 8, 2020
How do you test for pluripotency of the hiPSCs after editing? Gene-editing Discussion	1	1162	September 28, 2018
Have you guys began hiPSC differentiation in to cardiomyocytes? hiPSC Culture Discussion cardiac	3	2360	September 27, 2018
How do you screen for precise editing? Gene-editing Discussion	1	986	September 27, 2018
When should I use ROCK inhibitor? hiPSC Culture Discussion	2	2303	December 7, 2019
Batch processing for segmenter tool Segmenter	8	1286	May 13, 2020
Viewing Voxels Using ITK Widgets Miscellaneous	3	1000	February 12, 2020
Writing to a TIFF File with Voxel Spacing [Error in Codebase] Segmenter aiscimageio	6	1330	March 6, 2020
3D Visualization Workshop - Oct 1st 2019 Miscellaneous events	7	1244	December 28, 2019
Image size error- Same image has different sizes on different cpus? Segmenter	7	1219	February 15, 2021
Nucleus DAPI segmentation (only) Segmenter segmentation	8	1095	February 25, 2021
Segmentation, clear_border Segmenter segmentation	6	1234	October 8, 2019
Education Webinar: Distance Learning for Cell Biology: a ready-to-use virtual lab for teaching mitosis - April 14, 2020 Education events	3	1627	April 15, 2020
No module named 'aicssegmentation' Segmenter	7	1041	December 22, 2020
Types of Matrigel- GFR? hESC qualified? hiPSC Culture Discussion matrigel	1	2014	November 4, 2022
Error Loading Images in Look Up Table Segmenter getting-started	6	1059	July 22, 2020
Error when running Look Up Table Demo Classic Image Segmentation Segmenter	6	1032	July 21, 2020
Opening segmentation .py files in python Segmenter segmentation	7	950	October 27, 2020
Why python, not imageJ? Miscellaneous	3	1330	March 1, 2024
Plasmids for my lab? Gene-editing Discussion	1	1877	September 26, 2018
The Virtual Lab webinar: Mitosis and Microscopy, June 9, 2020 Education	2	1485	June 10, 2020
The training images for the label free prediction Miscellaneous getting-started	1	1756	August 13, 2020
Downloading LabelFree Image From Quilt Download cell-feature-explorer , getting-started	4	1089	August 10, 2020
Single cell vs colony passaging hiPSC Culture Discussion	1	1696	December 7, 2019
Matrigel vs geltrex hiPSC Culture Discussion	3	1180	November 10, 2022
Agave download problem AGAVE agave	4	1008	February 12, 2020
Dilation function speed Segmenter	5	914	January 31, 2020
Pen/Strep or no Pen/Strep hiPSC Culture Discussion	1	1563	August 6, 2019
How to transfect hiPSCs with gRNA and Cas9 protein Gene-editing Discussion	2	1254	September 27, 2018
Deep Learning Framework for Allen Cell Segmenter Segmenter segmentation	3	1033	January 13, 2020
Silent gene-editing of transcriptionally silent genes in hiPSCs Gene-editing Discussion	2	1130	December 4, 2020
Cvapipeline_analysis - Can I download a smaller dataset from Quilt to test the integrated modeling and analysis pipeline? Download getting-started	5	774	February 18, 2021
Using deep learning segmenter to segment whole cells Segmenter segmentation	3	904	September 3, 2020
Saving orientation and zoom for 3d Stack AGAVE agave	4	792	June 3, 2021
Has anyone tried running the ML code on a cluster? Software & Code	5	717	January 23, 2022
Help Downloading Package Download	3	852	June 4, 2020
Differentiation to other cell types hiPSC Culture Discussion	1	1153	February 13, 2019
Separating zstacks into individual cells Segmenter segmentation	2	906	January 30, 2020