Allen Cell Discussion Forum

Topic	Replies	Views	Activity
Distance Transform 3D Segmenter	20	3476	January 14, 2020
Errors with running the demo of the Classic Image Segmentation Segmenter segmentation	17	2125	September 28, 2020
Cardiomyocyte Differentiation Issue hiPSC Culture Discussion cardiac	12	1871	February 22, 2024
Classic Image Segmentation installation Segmenter	9	1359	February 12, 2020
3D Visualization Workshop - Oct 1st 2019 Miscellaneous events	9	1199	December 28, 2019
Batch Processing Error Segmenter	9	1170	November 21, 2020
Image dimensions seem to be assigned incorrectly by aicsimageio when running deep learning segmenter Segmenter	12	1009	December 22, 2020
Playground 9: Segmentation workflows for lamin b1 (interphase) Segmenter segmentation	13	881	June 9, 2021
3D single cell image data set Segmenter segmentation , segmenter , napari	12	889	October 27, 2021
Iterative Deep Learning Workflow Segmenter	10	793	August 20, 2021
Downloading Cell Feature Data Software & Code getting-started	10	234	September 8, 2023
Pictures of Healthy vs Unhealthy hiPSC colonies hiPSC Culture Discussion	3	5003	January 16, 2019
Aicsshparam/cvapipe_analysis - questions about adding new alignment functions Miscellaneous	1	803	March 9, 2021
Steps to compare Allen Institute's raw sequencing data for the WTC-11 hiPSC line Gene-editing Discussion sequencing	6	2178	April 8, 2020
How do you test for pluripotency of the hiPSCs after editing? Gene-editing Discussion	1	1135	September 28, 2018
Have you guys began hiPSC differentiation in to cardiomyocytes? hiPSC Culture Discussion cardiac	4	2265	August 6, 2019
How do you screen for precise editing? Gene-editing Discussion	1	946	September 27, 2018
Batch processing for segmenter tool Segmenter	8	1245	May 13, 2020
Viewing Voxels Using ITK Widgets Miscellaneous	3	963	February 12, 2020
Writing to a TIFF File with Voxel Spacing [Error in Codebase] Segmenter aiscimageio	6	1267	March 6, 2020
Image size error- Same image has different sizes on different cpus? Segmenter	7	1166	February 15, 2021
When should I use ROCK inhibitor? hiPSC Culture Discussion	2	1882	December 7, 2019
Plasmids for my lab? Gene-editing Discussion	2	1839	July 7, 2020
Education Webinar: Distance Learning for Cell Biology: a ready-to-use virtual lab for teaching mitosis - April 14, 2020 Education events	3	1581	April 15, 2020
Segmentation, clear_border Segmenter segmentation	6	1171	October 8, 2019
Nucleus DAPI segmentation (only) Segmenter segmentation	8	1030	February 25, 2021
No module named 'aicssegmentation' Segmenter	7	966	December 22, 2020
Error Loading Images in Look Up Table Segmenter getting-started	6	1013	July 22, 2020
Error when running Look Up Table Demo Classic Image Segmentation Segmenter	6	976	July 21, 2020
Opening segmentation .py files in python Segmenter segmentation	7	905	October 27, 2020
Types of Matrigel- GFR? hESC qualified? hiPSC Culture Discussion matrigel	1	1809	November 4, 2022
Why python, not imageJ? Miscellaneous	3	1261	March 1, 2024
The training images for the label free prediction Miscellaneous getting-started	1	1724	August 13, 2020
The Virtual Lab webinar: Mitosis and Microscopy, June 9, 2020 Education	2	1401	June 10, 2020
Downloading LabelFree Image From Quilt Download cell-feature-explorer , getting-started	4	1052	August 10, 2020
Agave download problem AGAVE agave	4	970	February 12, 2020
Single cell vs colony passaging hiPSC Culture Discussion	1	1513	December 7, 2019
Dilation function speed Segmenter	5	872	January 31, 2020
How to transfect hiPSCs with gRNA and Cas9 protein Gene-editing Discussion	2	1188	September 27, 2018
Pen/Strep or no Pen/Strep hiPSC Culture Discussion	1	1434	August 6, 2019
Deep Learning Framework for Allen Cell Segmenter Segmenter segmentation	3	1000	January 13, 2020
Matrigel vs geltrex hiPSC Culture Discussion	3	958	November 10, 2022
Silent gene-editing of transcriptionally silent genes in hiPSCs Gene-editing Discussion	2	1089	December 4, 2020
Cvapipeline_analysis - Can I download a smaller dataset from Quilt to test the integrated modeling and analysis pipeline? Download getting-started	5	733	February 18, 2021
Using deep learning segmenter to segment whole cells Segmenter segmentation	3	869	September 3, 2020
Saving orientation and zoom for 3d Stack AGAVE agave	4	750	June 3, 2021
Help Downloading Package Download	3	829	June 4, 2020
Has anyone tried running the ML code on a cluster? Software & Code	5	670	January 23, 2022
Differentiation to other cell types hiPSC Culture Discussion	1	1116	February 13, 2019
Culturing cells for imaging on glass hiPSC Culture Discussion	1	1093	July 7, 2020