Hello! So I have Allen Segmenter downloaded on my laptop and on a desktop…but for some reason the desktop is having issues opening files because of the following error:
I noticed in the “Loading the Data” part of the workbook:
My desktop says –
print(IMG.shape)
(1, 1, 1, 141, 512, 1167) -> it has an extra 1 in there
My laptop says –
print(IMG.shape)
(1, 1, 141, 512, 1167) -> this works
I double checked that I am indeed using the exact same file on both. Any hints as to why this is happening and where the extra 1 is coming from ? The only thing I can think that may be different between the desktop installation and the laptop one is I had to use numpy 1.19.3 (instead of 1.19.4) on the desktop because it was getting a runtime error otherwise.
EDIT: The laptop (one that works) is aicsimageio version 0.6.4, aicsimageprocessing 0.7.1, aicssegmentation 0.1.18.dev1.
The desktop one is aicsimageio 3.3.1, aicsimageprocessing 0.7.1, aicssegmentation 0.1.21.dev1.