Allen Cell Discussion Forum

Software & Code


Miscellaneous For topics that do not belong to other existing categories. AGAVE Advanced GPU Accelerated Volume Explorer (AGAVE) is a volume viewer that uses path-trace rendering in an interface designed and optimized for the display of multi-channel OME TIFF files. Download For topics related to data, software, and document downloads that the Allen Institute of Cell Science provides via our website allencell.org and other access points. Segmenter The Allen Cell & Structure Segmenter is a Python-based open source toolkit developed at the Allen Institute for Cell Science for 3D segmentation of intracellular structures in fluorescence microscope images. Simularium The project Simularium aims to involve the wider biology community in building and analyzing spatial mechanistic simulations at different levels of scale and connecting them in the context of whole cells. This is a place to discuss Simularium issues and to exchange knowledge regarding the software & code we release.
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