Allen Cell Discussion Forum

Topic	Replies	Views	Activity
Distance Transform 3D Segmenter	20	3522	January 14, 2020
Errors with running the demo of the Classic Image Segmentation Segmenter segmentation	17	2141	September 28, 2020
Cardiomyocyte Differentiation Issue hiPSC Culture Discussion cardiac	12	1961	February 22, 2024
Classic Image Segmentation installation Segmenter	9	1373	February 12, 2020
Image dimensions seem to be assigned incorrectly by aicsimageio when running deep learning segmenter Segmenter	12	1067	December 22, 2020
3D Visualization Workshop - Oct 1st 2019 Miscellaneous events	9	1211	December 28, 2019
Batch Processing Error Segmenter	9	1184	November 21, 2020
Playground 9: Segmentation workflows for lamin b1 (interphase) Segmenter segmentation	13	903	June 9, 2021
3D single cell image data set Segmenter segmentation , segmenter , napari	12	908	October 27, 2021
Iterative Deep Learning Workflow Segmenter	10	812	August 20, 2021
Downloading Cell Feature Data Software & Code getting-started	10	242	September 8, 2023
Pictures of Healthy vs Unhealthy hiPSC colonies hiPSC Culture Discussion	5	5760	January 20, 2026
Aicsshparam/cvapipe_analysis - questions about adding new alignment functions Miscellaneous	1	811	March 9, 2021
Steps to compare Allen Institute's raw sequencing data for the WTC-11 hiPSC line Gene-editing Discussion sequencing	6	2230	April 8, 2020
Have you guys began hiPSC differentiation in to cardiomyocytes? hiPSC Culture Discussion cardiac	4	2299	August 6, 2019
How do you test for pluripotency of the hiPSCs after editing? Gene-editing Discussion	1	1148	September 28, 2018
How do you screen for precise editing? Gene-editing Discussion	1	964	September 27, 2018
Batch processing for segmenter tool Segmenter	8	1252	May 13, 2020
When should I use ROCK inhibitor? hiPSC Culture Discussion	2	2159	December 7, 2019
Viewing Voxels Using ITK Widgets Miscellaneous	3	972	February 12, 2020
Writing to a TIFF File with Voxel Spacing [Error in Codebase] Segmenter aiscimageio	6	1285	March 6, 2020
Image size error- Same image has different sizes on different cpus? Segmenter	7	1189	February 15, 2021
Plasmids for my lab? Gene-editing Discussion	2	1850	July 7, 2020
Education Webinar: Distance Learning for Cell Biology: a ready-to-use virtual lab for teaching mitosis - April 14, 2020 Education events	3	1594	April 15, 2020
Nucleus DAPI segmentation (only) Segmenter segmentation	8	1053	February 25, 2021
Segmentation, clear_border Segmenter segmentation	6	1190	October 8, 2019
No module named 'aicssegmentation' Segmenter	7	982	December 22, 2020
Error Loading Images in Look Up Table Segmenter getting-started	6	1030	July 22, 2020
Types of Matrigel- GFR? hESC qualified? hiPSC Culture Discussion matrigel	1	1912	November 4, 2022
Error when running Look Up Table Demo Classic Image Segmentation Segmenter	6	992	July 21, 2020
Opening segmentation .py files in python Segmenter segmentation	7	917	October 27, 2020
Why python, not imageJ? Miscellaneous	3	1293	March 1, 2024
The Virtual Lab webinar: Mitosis and Microscopy, June 9, 2020 Education	2	1448	June 10, 2020
The training images for the label free prediction Miscellaneous getting-started	1	1733	August 13, 2020
Downloading LabelFree Image From Quilt Download cell-feature-explorer , getting-started	4	1065	August 10, 2020
Single cell vs colony passaging hiPSC Culture Discussion	1	1624	December 7, 2019
Matrigel vs geltrex hiPSC Culture Discussion	3	1098	November 10, 2022
Agave download problem AGAVE agave	4	982	February 12, 2020
Pen/Strep or no Pen/Strep hiPSC Culture Discussion	1	1533	August 6, 2019
Dilation function speed Segmenter	5	885	January 31, 2020
How to transfect hiPSCs with gRNA and Cas9 protein Gene-editing Discussion	2	1217	September 27, 2018
Deep Learning Framework for Allen Cell Segmenter Segmenter segmentation	3	1010	January 13, 2020
Silent gene-editing of transcriptionally silent genes in hiPSCs Gene-editing Discussion	2	1106	December 4, 2020
Cvapipeline_analysis - Can I download a smaller dataset from Quilt to test the integrated modeling and analysis pipeline? Download getting-started	5	746	February 18, 2021
Using deep learning segmenter to segment whole cells Segmenter segmentation	3	882	September 3, 2020
Saving orientation and zoom for 3d Stack AGAVE agave	4	767	June 3, 2021
Help Downloading Package Download	3	838	June 4, 2020
Has anyone tried running the ML code on a cluster? Software & Code	5	678	January 23, 2022
Differentiation to other cell types hiPSC Culture Discussion	1	1134	February 13, 2019
Culturing cells for imaging on glass hiPSC Culture Discussion	1	1118	July 7, 2020