Allen Cell Discussion Forum

Topic	Replies	Views	Activity
Distance Transform 3D Segmenter	20	3341	January 14, 2020
Errors with running the demo of the Classic Image Segmentation Segmenter segmentation	17	2025	September 28, 2020
Cardiomyocyte Differentiation Issue hiPSC Culture Discussion cardiac	12	1721	February 22, 2024
Classic Image Segmentation installation Segmenter	9	1290	February 12, 2020
3D Visualization Workshop - Oct 1st 2019 Miscellaneous events	9	1158	December 28, 2019
Batch Processing Error Segmenter	9	1115	November 21, 2020
Image dimensions seem to be assigned incorrectly by aicsimageio when running deep learning segmenter Segmenter	12	904	December 22, 2020
Playground 9: Segmentation workflows for lamin b1 (interphase) Segmenter segmentation	13	813	June 9, 2021
3D single cell image data set Segmenter segmentation , segmenter , napari	12	818	October 27, 2021
Iterative Deep Learning Workflow Segmenter	10	744	August 20, 2021
Downloading Cell Feature Data Software & Code getting-started	10	173	September 8, 2023
Pictures of Healthy vs Unhealthy hiPSC colonies hiPSC Culture Discussion	3	4216	January 16, 2019
Aicsshparam/cvapipe_analysis - questions about adding new alignment functions Miscellaneous	1	759	March 9, 2021
Steps to compare Allen Institute's raw sequencing data for the WTC-11 hiPSC line Gene-editing Discussion sequencing	6	2068	April 8, 2020
Have you guys began hiPSC differentiation in to cardiomyocytes? hiPSC Culture Discussion cardiac	4	2177	August 6, 2019
How do you test for pluripotency of the hiPSCs after editing? Gene-editing Discussion	1	1077	September 28, 2018
How do you screen for precise editing? Gene-editing Discussion	1	892	September 27, 2018
Batch processing for segmenter tool Segmenter	8	1206	May 13, 2020
Viewing Voxels Using ITK Widgets Miscellaneous	3	916	February 12, 2020
Image size error- Same image has different sizes on different cpus? Segmenter	7	1119	February 15, 2021
Writing to a TIFF File with Voxel Spacing [Error in Codebase] Segmenter aiscimageio	6	1177	March 6, 2020
Plasmids for my lab? Gene-editing Discussion	2	1783	July 7, 2020
Education Webinar: Distance Learning for Cell Biology: a ready-to-use virtual lab for teaching mitosis - April 14, 2020 Education events	3	1518	April 15, 2020
Segmentation, clear_border Segmenter segmentation	6	1115	October 8, 2019
Nucleus DAPI segmentation (only) Segmenter segmentation	8	937	February 25, 2021
When should I use ROCK inhibitor? hiPSC Culture Discussion	2	1517	December 7, 2019
No module named 'aicssegmentation' Segmenter	7	922	December 22, 2020
Error Loading Images in Look Up Table Segmenter getting-started	6	964	July 22, 2020
Error when running Look Up Table Demo Classic Image Segmentation Segmenter	6	918	July 21, 2020
Opening segmentation .py files in python Segmenter segmentation	7	844	October 27, 2020
The training images for the label free prediction Miscellaneous getting-started	1	1683	August 13, 2020
The Virtual Lab webinar: Mitosis and Microscopy, June 9, 2020 Education	2	1294	June 10, 2020
Why python, not imageJ? Miscellaneous	3	1118	March 1, 2024
Downloading LabelFree Image From Quilt Download cell-feature-explorer , getting-started	4	991	August 10, 2020
Types of Matrigel- GFR? hESC qualified? hiPSC Culture Discussion matrigel	1	1552	November 4, 2022
Dilation function speed Segmenter	5	843	January 31, 2020
Agave download problem AGAVE agave	4	898	February 12, 2020
How to transfect hiPSCs with gRNA and Cas9 protein Gene-editing Discussion	2	1131	September 27, 2018
Deep Learning Framework for Allen Cell Segmenter Segmenter segmentation	3	963	January 13, 2020
Single cell vs colony passaging hiPSC Culture Discussion	1	1297	December 7, 2019
Silent gene-editing of transcriptionally silent genes in hiPSCs Gene-editing Discussion	2	1041	December 4, 2020
Pen/Strep or no Pen/Strep hiPSC Culture Discussion	1	1255	August 6, 2019
Cvapipeline_analysis - Can I download a smaller dataset from Quilt to test the integrated modeling and analysis pipeline? Download getting-started	5	685	February 18, 2021
Using deep learning segmenter to segment whole cells Segmenter segmentation	3	815	September 3, 2020
Help Downloading Package Download	3	799	June 4, 2020
Saving orientation and zoom for 3d Stack AGAVE agave	4	704	June 3, 2021
Differentiation to other cell types hiPSC Culture Discussion	1	1059	February 13, 2019
Culturing cells for imaging on glass hiPSC Culture Discussion	1	1056	July 7, 2020
Has anyone tried running the ML code on a cluster? Software & Code	5	604	January 23, 2022
Separating zstacks into individual cells Segmenter segmentation	2	830	January 30, 2020