Allen Cell Discussion Forum

Axes in Cell Feature Explorer

I would like to ask about the features in the Cell Feature Explorer. One of the available axes to choose from for the graph is cell segmentation (-1, 0, 1). What does each of the number represents in the terms of cell segmentation?

Hi there, the axes for Cell Segmentation are as follows:

1: segmentation is complete, no missing parts, mitosis looks good

0: segmentation is incomplete, missing parts or segmentation of mitotic event shows half of a M6/M7 cell or a M6/M7 cell that got segmented against the edge of the field of view.

-1: no annotation

Very soon we will have text labels on the graph axes for features that have discrete text descriptions and are not continuous measurements. That will be appearing within a few days, most likely.