# \#segmenter **URL:** https://forum.allencell.org/tag/segmenter/17.md [Latest](https://forum.allencell.org/latest.md) · [Categories](https://forum.allencell.org/categories.md) · [Tags](https://forum.allencell.org/tags.md) --- ## [Image viewer error classic segmentation jupyter notebook](https://forum.allencell.org/t/image-viewer-error-classic-segmentation-jupyter-notebook/455)
**Author:** [@AidanF](https://forum.allencell.org/u/AidanF)\ **Replies:** 4\ **Last updated:** [August 15, 2024, 10:09pm UTC](https://forum.allencell.org/t/image-viewer-error-classic-segmentation-jupyter-notebook/455 "2024-08-15T22:09:05Z")
Hi All, New error experienced when running the look up table demo via jupyter notebook (through anaconda). During the loading the data step I get the following error: Failed to parse XML for the provided file. Error: … --- ## [Found way around not well formed error and itkwidgets error, Classical Segmenter](https://forum.allencell.org/t/found-way-around-not-well-formed-error-and-itkwidgets-error-classical-segmenter/685)
**Author:** [@jcvance](https://forum.allencell.org/u/jcvance)\ **Replies:** 0\ **Last updated:** [March 8, 2024, 4:18pm UTC](https://forum.allencell.org/t/found-way-around-not-well-formed-error-and-itkwidgets-error-classical-segmenter/685 "2024-03-08T16:18:46Z")
Hi all, I was having an issue running demo\_TNNI1 on jupyter notebook for the classical segmenter. I am running it on Windows. When reading the TNNI1 data file, I got this note: “Failed to parse XML for the provided file… --- ## [AICSImage not Defined, Classical Segmenter](https://forum.allencell.org/t/aicsimage-not-defined-classical-segmenter/683)
**Author:** [@jcvance](https://forum.allencell.org/u/jcvance)\ **Replies:** 2\ **Last updated:** [February 27, 2024, 9:54pm UTC](https://forum.allencell.org/t/aicsimage-not-defined-classical-segmenter/683 "2024-02-27T21:54:07Z")
Hi all, I am having difficulty running playground\_npm1. After loading the image, I get this error: NameError Traceback (most recent call last) ~\\AppData\\Local\\Temp\\ipykernel\_28628\\1638… --- ## [Aicssegmentation not found in Jupyter, Classic Segmentation](https://forum.allencell.org/t/aicssegmentation-not-found-in-jupyter-classic-segmentation/681)
**Author:** [@jcvance](https://forum.allencell.org/u/jcvance)\ **Replies:** 3\ **Last updated:** [February 24, 2024, 12:11am UTC](https://forum.allencell.org/t/aicssegmentation-not-found-in-jupyter-classic-segmentation/681 "2024-02-24T00:11:31Z")
Hi, I am new to python and jupyter. I have been getting this error in demo\_TNNI1 on jupyter notebook: ModuleNotFoundError Traceback (most recent call last) ~\\AppData\\Local\\Temp\\ipykernel\_8960\\3994… --- ## [Segmenter training data and trained models](https://forum.allencell.org/t/segmenter-training-data-and-trained-models/675)
**Author:** [@oded](https://forum.allencell.org/u/oded)\ **Replies:** 2\ **Last updated:** [January 10, 2024, 7:42pm UTC](https://forum.allencell.org/t/segmenter-training-data-and-trained-models/675 "2024-01-10T19:42:24Z")
Hi From the tutorials on segmentation I understand that there is a pipeline to be followed. First classic segmentation is done followed by DL segmentation using the good classic results as ground truth (curation). It m… --- ## [Watershed import error napari allen segementer](https://forum.allencell.org/t/watershed-import-error-napari-allen-segementer/452)
**Author:** [@AidanF](https://forum.allencell.org/u/AidanF)\ **Replies:** 0\ **Last updated:** [June 18, 2022, 1:51am UTC](https://forum.allencell.org/t/watershed-import-error-napari-allen-segementer/452 "2022-06-18T01:51:47Z")
Hello, I’m using the Allen Cell Segmenter via Napari and am getting the following error when using certain protocols (which include watershed): ImportError: cannot import name ‘watershed’ from ‘skimage.morphology’ (C:\\… --- ## [Image Reading Error Classic Segmenter](https://forum.allencell.org/t/image-reading-error-classic-segmenter/454)
**Author:** [@AidanF](https://forum.allencell.org/u/AidanF)\ **Replies:** 0\ **Last updated:** [June 21, 2022, 7:44pm UTC](https://forum.allencell.org/t/image-reading-error-classic-segmenter/454 "2022-06-21T19:44:35Z")
Hi all, Getting the following error when trying to segment data in jupyter notebooks: FILE\_NAME = ‘Test2.tif’ reader = AICSImage(FILE\_NAME) IMG = reader.data.astype(np.float32) print(IMG.shape) Failed to parse XML … --- ## [3D single cell image data set](https://forum.allencell.org/t/3d-single-cell-image-data-set/357)
**Author:** [@RexH](https://forum.allencell.org/u/RexH)\ **Replies:** 12\ **Last updated:** [October 27, 2021, 10:02pm UTC](https://forum.allencell.org/t/3d-single-cell-image-data-set/357 "2021-10-27T22:02:58Z")
Hello Allen Cell Segmentation Developers, I have read “Robust integrated intracellular organization of the human iPS cell” and “The Allen Cell and Structure Segmenter”. I am trying to create a 3D single cell image data … --- ## ["setup.py" not found error](https://forum.allencell.org/t/setup-py-not-found-error/354)
**Author:** [@AidanF](https://forum.allencell.org/u/AidanF)\ **Replies:** 1\ **Last updated:** [September 9, 2021, 5:18pm UTC](https://forum.allencell.org/t/setup-py-not-found-error/354 "2021-09-09T17:18:26Z")
Hi All, Getting the segmenter up and running on a new computer. No issues previously but running into this issue now when I issue the following command: "pip install -e .\[all\] ERROR: File “setup.py” not found. Director…